Download and setup LIBISIS
By downloading any of the files below, you accept the terms of the Matlab MCR Library License included with the distribution. Read the COPYING.rtf file in the License folder for information about which components may or may not be changed or redistributed.
If you have any problems, email the libisis-users mailing list.
Download LIBISIS
- Download the latest libisis build for your version of Matlab
| Windows | Linux&MacOS |
|---|---|
Matlab Ver 7.1 Matlab 2006a Matlab 2006b Matlab 2007a Matlab 2007b
|
You have to build your code from source using auto-tools; You need to be registered user to download the code from the repository at Libisis Home |
Windows
- Older versions :
- Unpack downloaded file into C:\mprogs or a directory of your choice eg X:\analysis
- Latest versions :
- Unpack the contents of the folder ISIS in the downloaded file into a folder of your choice. (ISIS by default e.g. 'C:\ISIS\' so that this folder would have two sub-folders namely Libisis and InstrumentFiles in it).
Requirements
- Matlab 2007a (or later)
- 1GB RAM memory
- 40MB free hard drive space
Setup Paths
- Edit the file libisis_on.mt and replace the variable $libisis_path$ to the path where you placed libisis (e.g. by string 'c:\ISIS\Libisis')
- Rename the file libisis_on.mt to libisis_on.m and copy the files libisis_on.m and start_app.m into the directory where your Matlab starts.
- Alternatively, add the directory where the files libisis_on.m and start_app.m are located to your Matlab search path (e.g. type addpath('c:\ISIS\Libisis') and savepath from Matlab command prompt or use Matlab GUI in File->Set Path)
Download Stand Alone Homer
- If you do not have matlab it is possible to download an executable which will run the homer GUI standalone
- Homer software created by Dr. Dickon Champion, standalone installation developed by Dean Whittaker. MCRInstaller and Matlab (c) The MathWorks, Inc. 1984-2008
| Windows | Linux | MacOS |
|---|---|---|
| Stand Alone Homer - the standalone homer zip file
MCRInstaller - required for the first run of homer. |
not available | not available |
you must set up Homer properly in order for it to work. Run the MCRInstaller once on your computer, if updating your homer installation, it is not required.
Install Stand Alone Homer
- The First time you download homer:
- Download the MCRInstaller file above
- Run the MCRInstaller.exe file and follow the on-screen instructions
- Download the homer zip file above
- Unzip to directory of your choice
- Run homer.exe to start homer.
Requirements
- 1GB RAM memory
- 40MB free hard drive space
- Administrative Rights for Installation.
Setup Memory Usage
Sometimes when we are treating large datasets, such as on MAPS, we cannot load all the data into the memory of the computer at once, we need to 'chunk' the data into smaller pieces. We therefore need to set the default number of workspaces in each 'chunk' to treat at any one time during the population of an IXTrunfile and the total amount of memory to allow the computer to use.
If the memory required for the number of workspaces in each chunk is greater than that defined then the number of workspaces is reduced until it fits in the memory or a failure status is raised. These two values are defined in ./matlab/homer/default_homer_nchunk.m which needs to be edited to suit the memory needs of your computer. Tests have shown that LIBISIS will populate data fastest when it is chunked in groups of 100 workspaces, so this is the default value in the file.
function nchunk=default_homer_nchunk % nchunk = default_homer_nchunk % nchunk is a two membered array % the first element is the default number of workspaces to be treated at % one time, and the second element is the maximum amount of memory (in MB) % that you want the computer to use nchunk=int32([100,500]);